Data analysis

I provide bioinformatics analysis of numerical datasets such as transcriptomics (bulk and single cell RNA-seq, SmartSeq and 10X Genomics Chromium libraries), proteomics, metabolomics or other quantitative measurements. Together we can answer your questions, e.g. what is the effect of a drug treatment on gene expression?

Examples of services include read mapping and counting, analysis and visualisation of large datasets, dimensionality reduction (e.g., PCA, t-SNE, UMAP), feature selection (e.g. differential expression), enrichment, network inference, data alignment and integration, ID mapping, annotation and curation.

The outcome of each project includes the results of the analysis, and if necessary figures for publications and the corresponding code. If relevant, the datasets can be submitted to public databases on behalf of the client.

Each project is different. Please, contact me for a quote.